GSM6373702: Mint-ChIP-seq from memory B cell (ENCLB298WUD); Homo sapi... - SRA

SRX16500355: GSM6373702: Mint-ChIP-seq from memory B cell (ENCLB298WUD); Homo sapiens; ChIP-Seq
8 ILLUMINA (NextSeq 500) runs: 35.5M spots, 4.8G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS880QZN

SAMN29769950 • SRS14131777 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: NextSeq 500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/fc792518-31dc-4829-81d3-4dc9299c91bf/@@download/attachment/Bernstein-mint-chip3-a-low-input-chip-seq-protocol-using-multiplexed-chromatin-and-T7-amplificationn.pdf general protocol: https://www.encodeproject.org/documents/59eca314-f378-4bd8-a437-49f823e217be/@@download/attachment/MINT%20ChIP%20Protocol%20-%20Bernstein%20ENCODE.pdf

Experiment attributes:

GEO Accession: GSM6373702

Links:

NCBI link: NCBI Entrez (gds)

Runs: 8 runs, 35.5M spots, 4.8G bases, 1.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR20476305	4,765,867	638.6M	241.6Mb	2022-07-26
SRR20476306	4,837,658	648.2M	247.9Mb	2022-07-25
SRR20476307	4,840,975	648.7M	248Mb	2022-07-26
SRR20476308	4,736,980	634.8M	239.5Mb	2022-07-24
SRR20476309	4,069,275	545.3M	193.6Mb	2022-07-26
SRR20476310	4,009,416	537.3M	187.2Mb	2022-07-26
SRR20476311	4,129,574	553.4M	196.2Mb	2022-07-25
SRR20476312	4,115,068	551.4M	193.7Mb	2022-07-26

ID:: 23229052

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